PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011181001
Common NameGSBRNA2T00011181001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 81aa    MW: 9304.91 Da    PI: 11.0804
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011181001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.4e-331568255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ+YR+
  GSBRNA2T00011181001 15 PRLRWNSDLHNSFVQAVEQLGGEHRATPKMVLQLMDVRGLTISHVKSHLQMYRS 68
                         8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-311169IPR009057Homeodomain-like
PROSITE profilePS5129410.0681171IPR017930Myb domain
SuperFamilySSF466894.84E-151368IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-251569IPR006447Myb domain, plants
PfamPF002493.1E-71667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MKTPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGEHRA TPKMVLQLMD VRGLTISHVK  60
SHLQMYRSMK LEESMQGKNI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289552.14e-50hypothetical protein CARUB_v10003097mg
RefseqXP_009144511.11e-49PREDICTED: uncharacterized protein LOC103868161
RefseqXP_013726299.11e-49PREDICTED: uncharacterized protein LOC106430070
RefseqXP_013617476.11e-49PREDICTED: uncharacterized protein LOC106323990
SwissprotQ700D92e-28MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078JWF37e-54A0A078JWF3_BRANA; BnaCnng71310D protein
STRINGBra018498.1-P4e-41(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-31G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]